Strain Differences in Zika Infection Gene Patterns

Summary: A new study reveals molecular differences between how the African and Asian strains of Zika virus infect neural progenitor cells.

Source: Emory Health Sciences.

Comparing Asian vs African Zika (or dengue) infection in neural progenitor cells.

Scientists have revealed molecular differences between how the African and Asian strains of Zika virus infect neural progenitor cells.

The results could provide insights into the Zika virus’ recent emergence as a global health emergency, and also point to inhibitors of the protein p53 as potential leads for drugs that could protect brain cells from cell death.

The findings, from the Emory/Johns Hopkins/Florida State team that showed this spring that neural progenitor cells are particularly vulnerable to Zika infection, were published in Nucleic Acid Research. The paper was also posted on BioRxiv before publication.

Zika virus was first discovered in Uganda in the 1940s, and two distinct lineages of Zika diverged sometime in the second half of the 20th century: African and Asian. The strains currently circulating in the Western Hemisphere, which have been linked to microcephaly in infants and Guillain Barre syndrome in adults, are more closely related to the Asian lineage.

The research team catalogued and compared genes turned on and off by Asian and African strains of Zika virus, as well as dengue virus, in human neural progenitor cells. The authors describe dengue as inducing more robust changes in gene expression than either strain of Zika. Although they show that dengue can infect neural progenitor cells like Zika can, dengue infection does not stunt the cells’ growth or lead to cell death.

“This shows that the differences between Zika and dengue are not at the level of being able to infect neural progenitors, but more about the harm Zika causes when it does infect those cells,” says senior author Peng Jin, PhD, professor of human genetics at Emory University School of Medicine.

The first author of the paper is postdoctoral fellow Feiran Zhang, PhD. Zhexing Wen, PhD, now assistant professor of psychiatry at Emory, is a co-author. Jin ‘s lab collaborated with Hongjun Song, PhD and Guo-li Ming, PhD at Johns Hopkins, Hengli Tang, PhD at Florida State, and Wei Zheng, PhD at NCATS (National Center for Advancing Translational Sciences).

Image shows a ven diagram.

The overlap in gene expression changes when neural progenitor cells are infected by African or Asian strains of Zika virus. Neurosciencenews image is credited to Nucleic Acids Research.

Zika induced changes that were more focused on genes involved on DNA replication and repair, indicating that Zika infection disrupts cell replication more. Zika and dengue are genetically related, and both viruses are transmitted by mosquitos. Dengue infection, which mainly affects cells in the blood, can lead to neurological complications. But it has not been associated with birth defects such as microcephaly in the same way Zika has.

In comparison with African strains, infection by the Asian strain of Zika virus more potently affected the p53 gene and genes connected with cells’ responses to viral infection, such as interferons. Both Zika strains were able to infect and cause cell death in neural progenitor cells.

P53, often mutated in cancer cells, is known as “guardian of the genome,” because it can promote DNA repair or arrest growth in response to DNA damage. The researchers tested whether pifithrins, compounds identified as inhibitors of p53, can protect neural cells from being killed by Zika infection. They can, although Jin cautions that pifithrins’ activity against Zika has not been tested in living animals.

“The p53 pathway could potentially be targeted with other compounds that are well tolerated in humans,” he says.

About this Zika research article

Funding: The neural progenitor cells used were derived from iPSCs (induced pluripotent stem cells), which were in turn derived from donor skin cells. The research at Emory was supported by the National Institute of Neurological Disorders and Stroke (NS079625) and the Emory Genetics Discovery Fund.

Source: Quinn Eastman – Emory Health Sciences
Image Source: This NeuroscienceNews.com image is credited to Nucleic Acids Research.
Original Research: Full open access research for “Molecular signatures associated with ZIKV exposure in human cortical neural progenitors” by Feiran Zhang, Christy Hammack, Sarah C. Ogden, Yichen Cheng, Emily M. Lee, Zhexing Wen, Xuyu Qian, Ha Nam Nguyen, Yujing Li, Bing Yao, Miao Xu, Tianlei Xu, Li Chen, Zhiqin Wang, Hao Feng, Wei-Kai Huang, Ki-jun Yoon, Chao Shan, Luoxiu Huang, Zhaohui Qin, Kimberly M. Christian, Pei-Yong Shi, Mingjiang Xu, Menghang Xia, Wei Zheng, Hao Wu, Hongjun Song, Hengli Tang, Guo-Li Ming, and Peng Jin in Nucleic Acids Research. Published online August 31 2016 doi:10.1093/nar/gkw765

Cite This NeuroscienceNews.com Article
Emory Health Sciences. “Strain Differences in Zika Infection Gene Patterns.” NeuroscienceNews. NeuroscienceNews, 1 September 2016.
<http://neurosciencenews.com/genetics-zika-infection-4941/>.
Emory Health Sciences. (2016, September 1). Strain Differences in Zika Infection Gene Patterns. NeuroscienceNews. Retrieved September 1, 2016 from http://neurosciencenews.com/genetics-zika-infection-4941/
Emory Health Sciences. “Strain Differences in Zika Infection Gene Patterns.” http://neurosciencenews.com/genetics-zika-infection-4941/ (accessed September 1, 2016).

Abstract

Molecular signatures associated with ZIKV exposure in human cortical neural progenitors

Zika virus (ZIKV) infection causes microcephaly and has been linked to other brain abnormalities. How ZIKV impairs brain development and function is unclear. Here we systematically profiled transcriptomes of human neural progenitor cells exposed to Asian ZIKVC, African ZIKVM, and dengue virus (DENV). In contrast to the robust global transcriptome changes induced by DENV, ZIKV has a more selective and larger impact on expression of genes involved in DNA replication and repair. While overall expression profiles are similar, ZIKVC, but not ZIKVM, induces upregulation of viral response genes and TP53. P53 inhibitors can block the apoptosis induced by both ZIKVC and ZIKVM in hNPCs, with higher potency against ZIKVC-induced apoptosis. Our analyses reveal virus- and strain-specific molecular signatures associated with ZIKV infection. These datasets will help to investigate ZIKV-host interactions and identify neurovirulence determinants of ZIKV.

“Molecular signatures associated with ZIKV exposure in human cortical neural progenitors” by Feiran Zhang, Christy Hammack, Sarah C. Ogden, Yichen Cheng, Emily M. Lee, Zhexing Wen, Xuyu Qian, Ha Nam Nguyen, Yujing Li, Bing Yao, Miao Xu, Tianlei Xu, Li Chen, Zhiqin Wang, Hao Feng, Wei-Kai Huang, Ki-jun Yoon, Chao Shan, Luoxiu Huang, Zhaohui Qin, Kimberly M. Christian, Pei-Yong Shi, Mingjiang Xu, Menghang Xia, Wei Zheng, Hao Wu, Hongjun Song, Hengli Tang, Guo-Li Ming, and Peng Jin in Nucleic Acids Research. Published online August 31 2016 doi:10.1093/nar/gkw765

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