Summary: Obstructive sleep apnea (OSA), a common disorder resulting in low blood oxygen levels, triggers significant changes in gene activity throughout the day.
The study subjected mice to intermittent hypoxic conditions, similar to those experienced by OSA sufferers, and found substantial alterations in gene transcription across multiple tissues. This discovery offers a profound insight into the disorder’s physiological impacts and may enable earlier diagnosis and tracking of OSA.
Known clock genes were among the most affected, leading to widespread circadian activity changes.
Obstructive sleep apnea affects over a billion people worldwide and leads to considerable gene activity alterations due to intermittent hypoxia.
In the study, nearly 16% of all genes in the lungs were affected by intermittent hypoxia, with significant changes also seen in the heart, liver, and cerebellum.
The genes exhibiting natural circadian rhythmicity were especially impacted, signaling major shifts in the body’s circadian activity.
The low blood oxygen levels of obstructive sleep apnea cause widespread changes in gene activity throughout the day, according to a new study in the open-access journal PLOS Biology by David Smith of Cincinnati Children’s Hospital Medical Center, US, and colleagues. The finding may lead to tools for earlier diagnosis and tracking of the disorder.
Obstructive sleep apnea (OSA) occurs when the airway becomes blocked (usually by soft tissue, associated with snoring and interrupted breathing during the night), resulting in intermittent hypoxia (low blood oxygen) and disrupted sleep.
It affects over one billion people worldwide and costs $150 billion per year in direct medical costs in the United States alone. OSA increases the risk for cardiovascular, respiratory, metabolic, and neurologic complications.
The activity of many genes varies naturally throughout the day, partially in response to activity of circadian clock genes, whose regular oscillations drive circadian variation in up to half the genome.
Gene activity also varies in response to external factors, including decreases in oxygen levels, which causes production of “hypoxia-inducible factors,” which influence activity of many genes, including clock genes.
To better understand how OSA may affect gene activity throughout the day, the authors exposed mice to intermittent hypoxic conditions and examined whole-genome transcription in six tissues—lung, liver, kidney, muscle, heart, and cerebellum—throughout the day.
The authors then evaluated variation in the circadian timing of gene expression in these same tissues.
The largest changes were found in lung, where intermittent hypoxia affected transcription of almost 16% of all genes, most of which were upregulated. Just under 5% of genes were affected in heart, liver, and cerebellum.
The subset of genes that normally exhibit circadian rhythmicity were even more strongly affected by intermittent hypoxia, with significant changes seen in 74% of such genes in the lung and 66.9% of such genes in the heart.
Among the genes affected in each tissue were known clock genes, an effect that likely contributed to the large changes in circadian activity of other genes seen in these tissues.
“Our findings provide novel insight into the pathophysiological mechanisms that could be associated with end-organ damage in patients with chronic exposure to intermittent hypoxia,” Smith said, “and may be useful to identify targets for future mechanistic studies evaluating diagnostic or therapeutic approaches;” for instance, through a blood test tracking one of the dysregulated gene products to detect early OSA.
Bala S. C. Koritala adds, “Our study using an animal model of Obstructive Sleep Apnea unveils time- and tissue-specific variations of the whole genome transcriptome and associated hallmark pathways.
“These unique findings uncover early biological changes linked to this disorder, occurring across multiple organ systems.”
About this genetics and sleep apnea research news
Author: Claire Turner Source: PLOS Contact: Claire Turner – PLOS Image: The image is credited to Neuroscience News
Obstructive sleep apnea in a mouse model is associated with tissue-specific transcriptomic changes in circadian rhythmicity and mean 24-hour gene expression
Intermittent hypoxia (IH) is a major clinical feature of obstructive sleep apnea (OSA). The mechanisms that become dysregulated after periods of exposure to IH are unclear, particularly in the early stages of disease.
The circadian clock governs a wide array of biological functions and is intimately associated with stabilization of hypoxia-inducible factors (HIFs) under hypoxic conditions. In patients, IH occurs during the sleep phase of the 24-hour sleep–wake cycle, potentially affecting their circadian rhythms.
Alterations in the circadian clock have the potential to accelerate pathological processes, including other comorbid conditions that can be associated with chronic, untreated OSA. We hypothesized that changes in the circadian clock would manifest differently in those organs and systems known to be impacted by OSA.
Using an IH model to represent OSA, we evaluated circadian rhythmicity and mean 24-hour expression of the transcriptome in 6 different mouse tissues, including the liver, lung, kidney, muscle, heart, and cerebellum, after a 7-day exposure to IH.
We found that transcriptomic changes within cardiopulmonary tissues were more affected by IH than other tissues. Also, IH exposure resulted in an overall increase in core body temperature.
Our findings demonstrate a relationship between early exposure to IH and changes in specific physiological outcomes.
This study provides insight into the early pathophysiological mechanisms associated with IH.