New chemical probe for visualizing brain immune cells

Summary: The chemical probe CDr20 can label microglia in living cells, researchers report.

Source: Duke-NUS Medical School

Researchers in South Korea and Singapore have, for the first time, developed a chemical probe that enables live-imaging of a type of immune cells in the brain, known as microglia, in a live animal brain. This discovery, led by the Institute for Basic Science (IBS) at Pohang University of Science and Technology (POSTECH), South Korea; the Singapore Bioimaging Consortium (SBIC) and Singapore Immunology Network (SIgN) of the Agency for Science, Technology and Research (A*STAR); and Duke-NUS Medical School, Singapore, will enable critical imaging studies to help scientists understand the development of brain diseases, such as stroke, autism, Alzheimer’s, and Parkinson’s disease.

Microglia are the brain’s primary resident immune cells. Although microglia were described a century ago, these cells have only recently been found to play an important role in the development of various neurological diseases. These discoveries have been aided by technological advances in isolating these cells, and transgenic small animal systems that express fluorescent proteins from microglia lineages, allowing for live imaging with light microscopy. However, studying microglia in humans and primates has been extremely difficult.

Being able to study microglia separately from other cells in the brain is critical for understanding brain development and disease. Although several biochemical markers and molecular imaging tools have been developed to study these specialised cells, no current methods have enabled the visualisation of microglia at cellular resolution in a live brain, which is clinically more relevant.

This collaborative study by two laboratories, led by Professor and Associate Director Young-Tae Chang, from IBS, who is also affiliated with A*STAR’s SBIC, and Associate Professor Hyunsoo Shawn Je, from Duke-NUS, identified a fluorescent marker for microglial cells, screened from a library of potential probes. The researchers then undertook extensive ex vivo and in vivo studies to demonstrate that one of the probes, named CDr20, could indeed label microglia in live cells. Immunostaining was used to verify the selective staining of microglia. The authors then used knock-out cell lines to identify the enzyme present in the microglia that ‘switched on’ the fluorescence of the probe.

Prof Chang explained, “Through a thorough structure-activity relationships study, we developed this high-performance fluorogenic chemical probe, CDr20, that can visualize microglia both in vitro and in vivo. Using a genome-scale CRISPR-Cas9 knockout screen, we identified Ugt1a7cas the functional target protein of CDr20 that activates the CDr20 fluorescence signal in microglia through the enzymatic glucuronidation reaction. Our probe can also label human- and primate- derived microglia, so this will be extremely useful to study microglia function in higher mammals, which is clinically more relevant.”

Fluorescent small molecules have become indispensable tools for biomedical research along with the rapidly developing optical imaging technology. However, cell-type specific fluorescent small molecules that are known to bind to molecular biomarkers are very rare.

This shows the labeling of microglia

Age-dependent microglia labelling by CDr20. Three different aged mice (P180, P360 and P660) from wild-type or triple-transgenic mouse model of Alzheimer’s disease (3xTg-AD) mice were intravenously injected with CDr20. The red areas are the CDr20-labelled microglia, while the green areas are Dextran-FITC labelled blood vessels. The image is credited to the Je Lab. Dr. Masahiro Fukuda. Duke-NUS Intravital Imaging Core.

“The Chang laboratory has extensive libraries of random fluorescent molecules and they utilize massive-cell based screening to identify specific fluorescent small molecules that highlight brain immune cells,” Assoc Prof Je said. “This small molecule is extremely selective to label microglia and related lineages of brain-resident immune cells. We utilized state-of-art in vivo multiphoton microscopy to image microglia in the brain upon intravenous dye injection, which has not been possible before.”

The authors state that they will continue work to improve the functionality and utility of CDr20. Furthermore, the Chang laboratory is screening new molecules that only label activated microglia, which scientists suspect to play a role in neuroinflammation in neurodegenerative disorders.

Noting the collaboration involving A*STAR and Duke-NUS in Singapore, and IBS, POSTECH, Ulsan National Institute of Science and Technology (UNIST), and Seoul National University in South Korea, Prof Patrick Casey, Senior Vice Dean for Research at Duke-NUS, remarked, “This work is an excellent example of multi-disciplinary collaboration among the best research institutions in Singapore and South Korea. It provides an important contribution to the study of microglia in the development of neurodegenerative disorders that can lead to future therapeutic approaches.”

About this neuroscience research article

Duke-NUS Medical School
Media Contacts:
Federico Graciano – Duke-NUS Medical School
Image Source:
The image is credited to the Je Lab. Dr. Masahiro Fukuda. Duke-NUS Intravital Imaging Core.

Original Research: Closed access
“Visualizing Microglia with a Fluorescence Turn‐On Ugt1a7c Substrate”. Young-Tae Chang et al.
Angewandte Chemie. doi:10.1002/ange.201903058


Visualizing Microglia with a Fluorescence Turn‐On Ugt1a7c Substrate

Microglia, the brain‐resident macrophage, are involved in brain development and contribute to the progression of neural disorders. Despite the importance of microglia, imaging of live microglia at a cellular resolution has been limited to transgenic mice. Efforts have therefore been dedicated to developing new methods for microglia detection and imaging. Using a thorough structure–activity relationships study, we developed CDr20, a high‐performance fluorogenic chemical probe that enables the visualization of microglia both in vitro and in vivo. Using a genome‐scale CRISPR‐Cas9 knockout screen, the UDP‐glucuronosyltransferase Ugt1a7c was identified as the target of CDr20. The glucuronidation of CDr20 by Ugt1a7c in microglia produces fluorescence.

Feel free to share this Neuroscience News.
Join our Newsletter
I agree to have my personal information transferred to AWeber for Neuroscience Newsletter ( more information )
Sign up to receive the latest neuroscience headlines and summaries sent to your email daily from
We hate spam and only use your email to contact you about newsletters. We do not sell email addresses. You can cancel your subscription any time.
No more articles