Many doctors and scientists think they could improve the diagnosis and understanding of autism spectrum disorders if they had reliable means to identify specific abnormalities in the brain. Such “biomarkers” have proven elusive, often because methods that show promise with one group of patients fail when applied to another. In a new study in Nature Communications, however, scientists report a new degree of success. Their proposed biomarker worked with a comparably high degree of accuracy in assessing two diverse sets of adults.
The technology, principally developed at the Advanced Telecommunications Research Institute International in Kyoto, Japan, with the major contributions from three co-authors at Brown University, is a computer algorithm called a “classifier” because it can classify sets of subjects — those with an autism spectrum disorder and those without — based on functional magnetic resonance imaging (fMRI) brain scans. By analyzing thousands of connections of brain network connectivity in scores of people with and without autism, the software found 16 key interregional functional connections that allowed it to tell, with high accuracy, who had been traditionally diagnosed with autism and who had not. The team developed the classifier with 181 adult volunteers at three sites in Japan and then applied it in a group of 88 American adults at seven sites. All the study volunteers with autism diagnoses had no intellectual disability.
“It is the first study to [successfully] apply a classifier to a totally different cohort,” said co-corresponding author Yuka Sasaki, a research associate professor of cognitive, linguistic and psychological sciences at Brown. “There have been numerous attempts before. We finally overcame the problem.”
The classifier, which blends two machine-learning algorithms, worked well in each population, averaging 85 percent accuracy among the Japanese volunteers and 75 percent accuracy among the Americans. The researchers calculated that the probability of seeing this degree of cross-population performance purely by chance was 1.4 in a million.
“These results indicate that although we developed a highly reliable classifier using the training data only in Japan, it is sufficiently universal to classify [autism] in the U.S.A. validation cohort,” wrote the team of clinicians and basic researchers led by Mitsuo Kawato of ATR.
In another way of validating the classifier, the researchers asked whether the differences it notes in the 16 connections were predictive not only of whether a person had an autism diagnosis at all, but whether they relate to performance on the main diagnostic method currently available to clinicians, the Autism Diagnostic Observation Schedule. ADOS is based not on markers of biology or physiology, but instead on a doctor’s interviews and observations of behavior. The classifier was able to predict scores on the ADOS communications component with a statistically significant correlation of 0.44.
The correlation suggests that the 16 connections identified by the classifier relate to attributes of importance in ADOS. When the researchers examined where these 16 connections are and what brain networks they affect, they found that 41 percent of the specific brain regions in which the 16 connections reside belonged within the cingulo-opercular network, which matters to brain functions such as conceiving of other people, face processing and emotional processing. Difficulties with such social and emotional perception tasks are important symptoms in autism spectrum disorders.
Finally, the team looked to see whether the classifier appropriately reflects the similarities and differences between autism spectrum disorders and other psychiatric conditions. Autism, for example, is known to share some similarities with schizophrenia but not with depression or attention deficit hyperactivity disorder, as indicated by a previous genome study. Applied to patients with each of these other disorders compared to similar people without the conditions, the classifier showed moderate but statistically significant accuracy in distinguishing schizophrenia patients, but not depression or ADHD patients.
Eventual clinical usefulness?
The MRI scans required to gather the data were simple, Sasaki said. Subjects only needed to spend about 10 minutes in the machine and didn’t have to perform any special tasks. They just had to stay still and rest.
Despite that simplicity and even though the classifier performed unprecedentedly well as a matter of research, Sasaki said, it is not yet ready to be a clinical tool. While the future may bring that development, refinements will be necessary first.
“The accuracy level needs to be much higher,” Sasaki said. “Eighty percent accuracy may not be useful in the real world.”
It’s also not clear how it would work among children, as the volunteers in this study were all adults.
But if the classifier’s accuracy can be improved further, the researchers hope that it can be used not only as a physiology-based diagnostic tool but also for monitoring treatment. Doctors perhaps will be able to use the tool someday to monitor whether therapies produce changes in brain connectivity, Sasaki said.
About this autism research
The study’s co-lead authors are Noriaki Yahata, Jun Morimoto and Ryuichiro Hashimoto. In addition to Sasaki, the paper’s authors at Brown are Professors Takeo Watanabe and Kazuhisa Shibata. Other authors are Giuseppe Lisi, Yuki Kawakubo, Hitoshi Kuwabara, Miho Kuroda, Takashi Yamada, Fukuda Megumi, Hiroshi Imamizu, Kiyoto Kasai and Nobumasa Kato.
Funding: This research was conducted under the “Development of BMI Technologies for Clinical Application” of the Strategic Research Program for Brain Sciences supported by Japan Agency for Medical Research and Development.
Source: David Orenstein – Brown University Image Credit: Image credited to Nature Communications. Original Research: Full open access research for “A small number of abnormal brain connections predicts adult autism spectrum disorder” by Noriaki Yahata, Jun Morimoto, Ryuichiro Hashimoto, Giuseppe Lisi, Kazuhisa Shibata, Yuki Kawakubo, Hitoshi Kuwabara, Miho Kuroda, Takashi Yamada, Fukuda Megumi, Hiroshi Imamizu, José E. Náñez Sr, Hidehiko Takahashi, Yasumasa Okamoto, Kiyoto Kasai, Nobumasa Kato, Yuka Sasaki, Takeo Watanabe and Mitsuo Kawato in Nature Communications. Published online April 14 2016 doi:10.1038/ncomms11254
A small number of abnormal brain connections predicts adult autism spectrum disorder
Although autism spectrum disorder (ASD) is a serious lifelong condition, its underlying neural mechanism remains unclear. Recently, neuroimaging-based classifiers for ASD and typically developed (TD) individuals were developed to identify the abnormality of functional connections (FCs). Due to over-fitting and interferential effects of varying measurement conditions and demographic distributions, no classifiers have been strictly validated for independent cohorts. Here we overcome these difficulties by developing a novel machine-learning algorithm that identifies a small number of FCs that separates ASD versus TD. The classifier achieves high accuracy for a Japanese discovery cohort and demonstrates a remarkable degree of generalization for two independent validation cohorts in the USA and Japan. The developed ASD classifier does not distinguish individuals with major depressive disorder and attention-deficit hyperactivity disorder from their controls but moderately distinguishes patients with schizophrenia from their controls. The results leave open the viable possibility of exploring neuroimaging-based dimensions quantifying the multiple-disorder spectrum.
“A small number of abnormal brain connections predicts adult autism spectrum disorder” by Noriaki Yahata, Jun Morimoto, Ryuichiro Hashimoto, Giuseppe Lisi, Kazuhisa Shibata, Yuki Kawakubo, Hitoshi Kuwabara, Miho Kuroda, Takashi Yamada, Fukuda Megumi, Hiroshi Imamizu, José E. Náñez Sr, Hidehiko Takahashi, Yasumasa Okamoto, Kiyoto Kasai, Nobumasa Kato, Yuka Sasaki, Takeo Watanabe and Mitsuo Kawato in Nature Communications. Published online April 14 2016 doi:10.1038/ncomms11254