Seeing Red in Live Brain Function

Summary: Researchers have identified a new fluorescent protein that makes it possible for live neurons to glow red when activated.

Source: Yale.

For years, green has been the most reliable hue for live brain imaging, but after using a new high-throughput screening method, researchers at the John B. Pierce Laboratory and the Yale School of Medicine, together with collaborators at Stanford University, have identified a new fluorescent protein that will make it possible for live neurons to glow red when activated.

This study appears online in Nature Methods.

This Voltage-Activated Red Neuronal Activity Monitor — or VARNAM for short, which means “hue” in Sanskrit — is part of a family of proteins called genetically-encoded voltage indicators (GEVIs), which change their fluorescence intensity when an electrical impulse shoots through a live neuron.

“While green fluorescent proteins have been worked on for over 50-60 years and tailored for a plethora of applications, red fluorescent proteins are newer, fewer, and notorious for folding poorly inside living cells,” said Madhuvanthi Kannan, co-first author and associate research scientist. “We went through several different red fluorescent proteins to find one with optimal photophysical properties that could express and perform well in many different living systems.”

Ganesh Vasan, co-first author and associate research scientist, explained that the automated screening approach he established allowed them to identify VARNAM. The high-throughput approach made it possible to screen thousands of potential red fluorescent proteins and select the most voltage-sensitive among them — the brightest and fastest to appear when a neuron is activated — in an efficient manner.

Previously, red fluorescent indicators had been too slow or too dull to be useful for researchers who are observing the functioning brain. Additionally, when experimenters wanted to watch two different groups or types of cells in action, they could not tag them with more than one color GEVI at the same time. The team not only demonstrated that VARNAM works in multiple systems, both in vitro and in vivo, but also used VARNAM to capture brain activity spikes in live flies in two hues — green and red — for the first time ever.

Now, with red in the mix, scientists will be able to monitor the full “read-write” process of live neurons accurately and easily, said the researchers.

red neuron
Red voltage indicator VARNAM expressed in the motor cortex of a mouse brain. Inset: a magnified view of a cortical pyramidal neuron showing VARNAM expression at the membrane. image is credited to Madhuvanthi Kannan and Ganesh Vasan; composite by Michael Helfenbein.

“The development of this probe represents another triumph in the field of directed evolution, honored this year with the Nobel Prize for Chemistry,” said senior author Vincent Pieribone, professor of cellular and molecular physiology and of neuroscience at Yale. “VARNAM represents a significant advance in our ability to directly monitor the electrical activity of brain cells in a less invasive and more comprehensive manner. This opens the door to ultimately understanding how complex nervous systems produce the elaborate behaviors that are the hallmark of advanced human and animal life.”.

[divider]About this neuroscience research article[/divider]

Funding: This study was funded by grants from the National Institutes of Health.

Other authors on this study include Cheng Huang, Simon Haziza, Jin Zhong Li, Hakan Inan, and Mark Schnitzer from Stanford University.

Source: Kendall Teare – Yale
Publisher: Organized by
Image Source: image is credited to Madhuvanthi Kannan and Ganesh Vasan; composite by Michael Helfenbein.
Original Research: Abstract for “Fast, in vivo voltage imaging using a red fluorescent indicator” by Madhuvanthi Kannan, Ganesh Vasan, Cheng Huang, Simon Haziza, Jin Zhong Li, Hakan Inan, Mark J. Schnitzer & Vincent A. Pieribone in Nature Methods. Published November 12 2018.

[divider]Cite This Article[/divider]

[cbtabs][cbtab title=”MLA”]Yale”Seeing Red in Live Brain Function.” NeuroscienceNews. NeuroscienceNews, 12 November 2018.
<>.[/cbtab][cbtab title=”APA”]Yale(2018, November 12). Seeing Red in Live Brain Function. NeuroscienceNews. Retrieved November 12, 2018 from[/cbtab][cbtab title=”Chicago”]Yale”Seeing Red in Live Brain Function.” (accessed November 12, 2018).[/cbtab][/cbtabs]


Fast, in vivo voltage imaging using a red fluorescent indicator

Genetically encoded voltage indicators (GEVIs) are emerging optical tools for acquiring brain-wide cell-type-specific functional data at unparalleled temporal resolution. To broaden the application of GEVIs in high-speed multispectral imaging, we used a high-throughput strategy to develop voltage-activated red neuronal activity monitor (VARNAM), a fusion of the fast Acetabularia opsin and the bright red fluorophore mRuby3. Imageable under the modest illumination intensities required by bright green probes (<50 mW mm−2), VARNAM is readily usable in vivo. VARNAM can be combined with blue-shifted optical tools to enable cell-type-specific all-optical electrophysiology and dual-color spike imaging in acute brain slices and live Drosophila. With enhanced sensitivity to subthreshold voltages, VARNAM resolves postsynaptic potentials in slices and cortical and hippocampal rhythms in freely behaving mice. Together, VARNAM lends a new hue to the optical toolbox, opening the door to high-speed in vivo multispectral functional imaging.

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