Imaging method enables researchers to generate stunning 3D images of human brain tissue. image is credited to the researchers.

New Tissue Technique Gives Stunning 3D Insights Into the Human Brain

Summary: A new imaging technique reveals the intricacies of the brain in unprecedented detail.

Source: Imperial College London.

The next generation method enables researchers to generate 3D images of fresh and archived brain tissue samples, resulting in stunning images of the human brain at the microscopic level.

Developed through an international collaboration between scientists at Imperial College London and The University of Hong Kong, the researchers believe the technique could help to shed new light on the basis of neurological diseases which affect millions around the world.

Traditionally, imaging brain samples has involved taking small tissue samples cut into ultrathin slices which can be stained to reveal characteristics of interest, such as proteins or other markers associated with disease.

In recent years, however, advances in molecular tagging techniques and the availability of laser microscopes have led to the development of modern tissue clearing techniques.

These techniques make brain tissue transparent and enable researchers to see the anatomical structure in 3D. However, these techniques were originally developed for rodent brain tissues and there have been very few studies on human tissue.

Many of the problems centred around the unique properties of the human brain, as well as preservation and processing of human tissue at post mortem.

To overcome these problems the team, led by 3 medical students, have developed a new tissue clearing solution, OPTIClear, enabling a wide range of molecular labelling methods for 3D visualisation of fresh and archival human brain tissue.


Researchers can use the technique to visualise markers of disease, such as tangles of tau protein in Alzheimer’s (pictured). Credit: The researchers.

Using this new approach, they have been able to stain nerve cells, glial cells and blood vessels, as well as pathological markers such as tangles of tau protein found in the brains of Alzheimer’s patients, in exquisite detail and determine how they relate to each other in 3D space.

“These techniques enable us to reveal the microscopic structure of the human brain in spectacular detail,” said Professor Steve Gentleman, Scientific Director of the Parkinson’s UK Brain Bank at Imperial College London.

He added: “By using tools such as these in the lab we will be able to visualise how cells interact with each other in 3D and learn more about the pathways and connections that are damaged in the common neurodegenerative brain conditions which have such an enormous impact on people’s lives.


A small cross section of the cerebellum. Credit: The researchers.

“This work is only made possible by the wonderful altruism of our brain donors and their families”

According to the researchers, the method is relatively inexpensive, is time efficient and easy to carry out, and is likely to form the basis for further technique development.

It is hoped that a better understanding of the connections and circuitry of the brain at this level will help uncover the pathologies that underlie the common degenerative diseases of the brain, such as Alzheimer’s and Parkinson’s disease.

About this neuroscience research article

Funding: The work was funded by the British Neuropathological Society, Alzheimer’s Research UK and by an Innovation grant from Parkinson’s UK.

Images from the study were acquired using confocal microscope provided by the Imperial FILM Facility at the Hammersmith Campus.

Source: Ryan O’Hare – Imperial College London
Publisher: Organized by
Image Source: images are credited to the researchers.
Original Research: Open access research in Nature Communications.

Cite This Article

[cbtabs][cbtab title=”MLA”]Imperial College London “New Tissue Technique Gives Stunning 3D Insights Into the Human Brain.” NeuroscienceNews. NeuroscienceNews, 15 March 2018.
<>.[/cbtab][cbtab title=”APA”]Imperial College London (2018, March 15). New Tissue Technique Gives Stunning 3D Insights Into the Human Brain. NeuroscienceNews. Retrieved March 15, 2018 from[/cbtab][cbtab title=”Chicago”]Imperial College London “New Tissue Technique Gives Stunning 3D Insights Into the Human Brain.” (accessed March 15, 2018).[/cbtab][/cbtabs]


Next generation histology methods for three-dimensional imaging of fresh and archival human brain tissues

Modern clearing techniques for the three-dimensional (3D) visualisation of neural tissue microstructure have been very effective when used on rodent brain but very few studies have utilised them on human brain material, mainly due to the inherent difficulties in processing post-mortem tissue. Here we develop a tissue clearing solution, OPTIClear, optimised for fresh and archival human brain tissue, including formalin-fixed paraffin-embedded material. In light of practical challenges with immunostaining in tissue clearing, we adapt the use of cresyl violet for visualisation of neurons in cleared tissue, with the potential for 3D quantification in regions of interest. Furthermore, we use lipophilic tracers for tracing of neuronal processes in post-mortem tissue, enabling the study of the morphology of human dendritic spines in 3D. The development of these different strategies for human tissue clearing has wide applicability and, we hope, will provide a baseline for further technique development.

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